A future savior in medical history

A future savior in medical history

February 6, 2019 DATAcated Challenge 0

I used ¬†the “mammographic masses” public dataset from the UCI repository (source: https://archive.ics.uci.edu/ml/datasets/Mammographic+Mass) This data contains 961 instances of masses detected in mammograms, and contains the following attributes:

BI-RADS assessment: 1 to 5 (ordinal) Age: patient’s age in years (integer) Shape: mass shape: round=1 oval=2 lobular=3 irregular=4 (nominal) Margin: mass margin: circumscribed=1 microlobulated=2 obscured=3 ill-defined=4 spiculated=5 (nominal) Density: mass density high=1 iso=2 low=3 fat-containing=4 (ordinal) Severity: benign=0 or malignant=1 (binominal)

BI-RADS is an assesment of how confident the severity classification is; it is not a “predictive” attribute and so we will discard it.

The age, shape, margin, and density attributes are the features that we will build our model with, and “severity” is the classification we will attempt to predict based on those attributes.

Although “shape” and “margin” are nominal data types, which sklearn typically doesn’t deal with well, they are close enough to ordinal that we shouldn’t just discard them. The “shape” for example is ordered increasingly from round to irregular.

A lot of unnecessary anguish and surgery arises from false positives arising from mammogram results. If we can build a better way to interpret them through supervised machine learning, it could improve a lot of lives.

I applied several different supervised machine learning techniques to this data set, and see which one yields the highest accuracy as measured with K-Fold cross validation (K=10). we will apply: Decision tree Random forest KNN Naive Bayes SVM Logistic Regression And, as a bonus challenge, a neural network using Keras.

The result was 80% precision with logistic regression and the decision tree lost the precision challenge.

By: Harshita Didwania

 

Leave a Reply

Your email address will not be published. Required fields are marked *